Login on a submit server, check How to Access section, and go to your prefered working location:
$ ssh fermi.ncg.ingrid.pt [mpinto@fermi01 ~]$ cd /lstore/auger/mpinto/FERMI/Geant4/geant11/RDM_18_DD/RADEM-build/tofarm [mpinto@fermi01 tofarm]$ _
Choose a login server with the operating system you wish to run your applications, check How to Access or QINFO fo find a suitable login server.
The submited jobs will run a workernode running the login server operating system, this way the user may safelly adapt scripts accordanly to the environment on the worker nodes, namelly storage and software availability.